Publications
Multiomics personalized network analyses highlight progressive disruption of central metabolism associated with COVID-19 severity.Cell Systems 13,665-681
Ambikan AT, Yang H, Krishnan S, SvenssonAkusjärvi S, Gupta S, Lourda M, Sperk M, Arif M, Zhang C, Nordqvist H, Ponnan SM, Sönnerborg A, Treutiger CJ, O’Mahony L, Mardinoglu K, Benfeitas R, Neogi U†
high-risk gut microbiota configuration associates with fatal hyperinflammatory immune and metabolic responses to SARS-CoV-2. Gut Microbes2022 14(1):2073131. doi: 10.1080/19490976.2022.2073131.
Albrich WC*, Ghosh TS*, Ahearn-Ford S, Mikaeloff F, Lunjani N, Forde B, Suh N, Kleger G, Pietsch U, Frischknecht M, Garzoni C, Forlenza R, Horgan M, Sadlier C, Negro TR, Pugin J, Wozniak H, Cerny A, Neogi U, O’Toole PW, O’Mahony L.A
Genome-scale metabolic model reveals long-term antiretroviral treatment-induced system-level metabolic shift towards oxidative phosphorylation in HIV-infection. Life Science Alliance. 2022 May 10;5(9):e202201405. doi: 10.26508/lsa.202201405.
Ambikan AT#, Svensson-Akusjärvi S#, Krishnan S, Sperk M, Nowak P, Vesterbacka J, Sönnerborg A, Benfeitas R, Neogi U†.
Multi-omics insights into host-viral response and pathogenesis in Crimean-Congo Hemorrhagic Fever Viruses for novel therapeutic target. eLife2022. online 19 April 2022, doi:10.7554/eLife.76071
Neogi U*†,Elaldi N*, Appelberg S, Ambikan AT, Kennedy E, Bagci B, Gupta S, Rodriguez JE, Svensson-Akusjärvi S, Monteil V, Végvári A, Benfeitas R, Banerjea A, Weber F, Hewson R, Mirazimi A
Nucleoside-Modified mRNA Vaccines Protect IFNAR-/- Mice against Crimean-Congo Hemorrhagic Fever Virus Infection. Journal of Virology 2022 96;3 e0156821
AppelbergS, John L, Pardi N, Végvári Á, Bereczky S, Ahlén G, Monteil V, Abdurahman S, Mikaeloff F, Beattie M, Tam Y, Sällberg M, Neogi U, Weissman D, Mirazimi A.
Metabolic Perturbation Associated With COVID-19 Disease Severity and SARS-CoV-2 Replication. Molecular & Cellular Proteomics : MCP 2021 20; 100159
Krishnan S, Nordqvist H, Ambikan AT, Gupta S, Sperk M, Svensson-Akusjärvi S, Mikaeloff F, Benfeitas R, Saccon E, Ponnan SM, Rodriguez JE, Nikouyan N, Odeh A, Ahlén G, Asghar M, Sällberg M, Vesterbacka J, Nowak P, Végvári Á, Sönnerborg A, Treutiger CJ, Neogi U.Molecular & Cellular Proteomics
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Fecal Metabolome Signature in the HIV-1 Elite Control Phenotype: Enrichment of Dipeptides Acts as an HIV-1 Antagonist but a Prevotella Agonist. Journal of Virology 2021 95;18 e0047921
SperkM, Ambikan AT, Ray S, Singh K, Mikaeloff F, Diez RC, Narayanan A, Vesterbacka J, Nowak P, Sönnerborg A, Neogi U.
Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells. Emerging Microbes & Infections 2020 9;1 1748-1760
AppelbergS, Gupta S, SvenssonAkusjärvi S, Ambikan AT, Mikaeloff F, Saccon E, Végvári Á, Benfeitas R, Sperk M, Ståhlberg M, Krishnan S, Singh K, Penninger JM, Mirazimi A, Neogi UEmerging Microbes & Infections 2020
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Sub-attomole detection of HIV-1 using padlock probes and rolling circle amplification combined with microfluidic affinity chromatography. Biosensors & Bioelectronics 2020 166; 112442
Soares RRG, Varela JC, Neogi U, Ciftci S, Ashokkumar M, Pinto IF, Nilsson M, Madaboosi N, Russom ABiosensors & Bioelectronics 2020
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